Labs · Liquid handling and fluidics

Harvard Apparatus OEM syringe pump

Harvard Apparatus OEM syringe pump, adapted from drkirkm/syringepump. It reads pumping; sets flow_rate and diameter; runs run_pump and stop_all. run_pump: start the configured pump address at the flow rate it was configured with. A hardware driver: the market serves its fake backend, so no instrument is needed.

hardwareRisk R2CC0-1.0contract_checkedserved on the fake backend
openai4s lab add labs/drkirkm__syringepump

Install

Three ways to run this device. Each one serves its fake backend: no instrument, no simulator install and no upstream checkout.

OpenAI4S (one command)

shell
openai4s lab add labs/drkirkm__syringepump

Installs the device into the OpenAI4S Lab on its fake backend and starts it. First time? See setup below.

Or, in the workbench, open the Lab tab → Market → Install.

Standalone MHS endpoint

shell
git clone --depth 1 https://github.com/PKU-YuanGroup/OpenMHS.git && cd OpenMHS
PYTHONPATH=MHS/sdk/src python3 -m mhs serve labs/drkirkm__syringepump --port 7400
# in a second terminal, from the same directory:
PYTHONPATH=MHS/sdk/src python3 -m mhs describe --endpoint http://127.0.0.1:7400

Serves the device as an MHS endpoint on port 7400 from an OpenMHS clone (Python 3.10 or later, standard library only); describe prints what it offers.

Any MCP host (Claude Desktop, Cursor, …)

mcp configuration
{
  "mcpServers": {
    "syringepump": {
      "command": "python3",
      "args": [
        "-m",
        "mhs",
        "serve",
        "labs/drkirkm__syringepump",
        "--mcp"
      ],
      "env": {
        "PYTHONPATH": "/path/to/OpenMHS/MHS/sdk/src"
      }
    }
  }
}

Add this server to the host's MCP configuration and replace /path/to/OpenMHS with the path of your OpenMHS clone. The host starts the server and talks to it on stdin and stdout.

What it does

Measures

  • pumping

Adjusts

  • flow_rate
  • diameter

Actions

run_pump
Start the configured pump address at the flow rate it was configured with
stop_all
Stop all three pump addresses with the STP, 01STP and 02STP commands

Names as the driver declares them. Units, limits and the safety declaration are in the package's REFERENCE.md.

First-time setup

The OpenAI4S workbench with the OpenMHS lab, from a source checkout:

shell
# OpenAI4S workbench with the OpenMHS lab (source checkout)
git clone --recursive https://github.com/PKU-YuanGroup/OpenAI4S.git
cd OpenAI4S && ./setup.sh && source .venv/bin/activate
openai4s lab add labs/drkirkm__syringepump
openai4s serve        # open the Lab tab

The standalone endpoint and the MCP server need only an OpenMHS clone and Python 3.10 or later. More in the market's getting-started guide and on the OpenAI4S host page.

Source and evidence

Pinned commit
6a39723535c3
Licence
CC0-1.0
Stars
1
Evidence
contract_checked on the fake backend
Backends
fake, hardware

The driver package MHS/drivers/labs/drkirkm__syringepump wraps the upstream code at the pinned commit. Its REFERENCE.md documents the full contract: every value, action, unit, limit and the safety declaration.